Paper Detail
Kiarash Tajbakhsh, Abdelrahman Faqieh, Michael Jopiti, Javier Garcia-Baroja, Philipp Zens, Branislav Zagrapan, Yuri Tolkach, Martin D. Berger, Aurel Perren, Bastian Dislich, Inti Zlobec, Amjad Khan
Pathology vision-language models are commonly built by pretraining or fine-tuning large encoders on paired image-caption data. We asked whether a pathology vision-language model can instead be assembled by parameter-efficient alignment of frozen unimodal foundation models, leaving their pretrained representations untouched. Here we present Lumen, which aligns frozen Virchow2 and BioMedBERT backbones using rank-4 adapters and projection heads, training only 0.40% of the total parameters on the public QUILT-1M corpus. Across nine public zero-shot patch benchmarks, Lumen achieved the highest mean chance-corrected balanced accuracy, 0.546 versus 0.461 for the strongest baseline (paired difference 0.086, 95% CI 0.042-0.136). On lymph-node metastasis detection, Lumen reached an AUROC of 0.964 (95% CI 0.956-0.971) on 4,214 held-out internal slides and 0.955 (95% CI 0.942-0.966) on 2,368 slides across nine external cohorts and six organs. At the internally calibrated threshold, it outperformed all vision-language baselines, with a balanced accuracy of 0.909 (95% CI 0.896-0.923) internally and 0.915 (95% CI 0.902-0.929) externally. Lumen performed competitively across the evaluations, with the exception of cross-modal retrieval, where it ranked third behind CONCH and PathGen-L/14. Fully fine-tuning both encoders gave Lumen no consistent benefit over low-rank adaptation, although it improved retrieval. Aligning frozen unimodal foundation models therefore yields strong and transferable performance at patch and slide level while training only a small fraction of the parameters.
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@article{tajbakhsh2026lumen,
title = {Lumen: Parameter-Efficient Alignment of Pretrained Vision and Language Encoders for Zero-Shot Computational Pathology},
author = {Kiarash Tajbakhsh and Abdelrahman Faqieh and Michael Jopiti and Javier Garcia-Baroja and Philipp Zens and Branislav Zagrapan and Yuri Tolkach and Martin D. Berger and Aurel Perren and Bastian Dislich and Inti Zlobec and Amjad Khan},
year = {2026},
abstract = {Pathology vision-language models are commonly built by pretraining or fine-tuning large encoders on paired image-caption data. We asked whether a pathology vision-language model can instead be assembled by parameter-efficient alignment of frozen unimodal foundation models, leaving their pretrained representations untouched. Here we present Lumen, which aligns frozen Virchow2 and BioMedBERT backbones using rank-4 adapters and projection heads, training only 0.40\% of the total parameters on the pu},
url = {https://arxiv.org/abs/2609.17868},
keywords = {cs.CV},
eprint = {2609.17868},
archiveprefix = {arXiv},
}
{}